Scaffold Ga0081455_10008187

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081455_10008187

Scaffold Ga0081455_10008187

Overview

Basic Information
Taxon OID	3300005937 Open in IMG/M
Scaffold ID	Ga0081455_10008187 Open in IMG/M
Source Dataset Name	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10903
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location Name	University of Puerto Rico, San Juan, Puerto Rico
Coordinates	Lat. (^o)	18.402889	Long. (^o)	-66.050054	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002061	Metagenome / Metatranscriptome	597	Y
F020740	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_100081871	F002061	AGGAG	VMKIEGLPVIEVDESEEITVAVRADDLLEGDTEQPKRHPIAIALRRQDDVDDARVTKNETFVRRGKKWFRYDAPDKR
Ga0081455_100081879	F020740	GAG	MRRLGESAVAVRAMRHDRLLYVLVPLYLIVVGALVIRQISLREEAKPAAIQDKPPPVAIEAKAPLVDKANDAGPQADASSGKRGLAPNCDKELRRTADLLRFFANRIQAGEEIQSVVADMRRQEKRISELCPD*

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