NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081455_10026453

Scaffold Ga0081455_10026453


Overview

Basic Information
Taxon OID3300005937 Open in IMG/M
Scaffold IDGa0081455_10026453 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5335
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006769Metagenome / Metatranscriptome365Y
F012601Metagenome / Metatranscriptome279Y
F020051Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0081455_100264532F020051GAGGMGEADDRTEADGKSLFIIRNGRKVAKFEAGEWKPLLPGVIVRNTPHGIKIEWPH*
Ga0081455_100264533F012601N/AMPHSKIKLVLVSARKSRGGDHWDKDDYDVRLGDKSGPVVGRIMRLPNSPKGRPWFLAITARGQPPSVYNRGYAESREQAMRYFKARYVGPPT*
Ga0081455_100264539F006769N/AMKADELFRNVPANIHELRLVLVGLPQDMKVIAESETGLLENTVEELCARTTWPPDLVVTTPRRLRPKSVVKISKAT*
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