Basic Information | |
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Taxon OID | 3300005940 Open in IMG/M |
Scaffold ID | Ga0073913_10001645 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3124 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River, Washington | |||||||
Coordinates | Lat. (o) | 46.372 | Long. (o) | -119.272 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001968 | Metagenome / Metatranscriptome | 610 | Y |
F004314 | Metagenome / Metatranscriptome | 444 | Y |
F042896 | Metagenome / Metatranscriptome | 157 | Y |
F068809 | Metagenome / Metatranscriptome | 124 | Y |
F070113 | Metagenome / Metatranscriptome | 123 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0073913_100016451 | F004314 | N/A | MYDDYDLDYTYSNDYGQDLEEYTLDLDEEYTRDGQDYETLAYRHYA* |
Ga0073913_100016455 | F001968 | GAG | MEDTLWTEIADMEGEIFDLDIPELKQEKFDFNEYINANYDY* |
Ga0073913_100016456 | F042896 | AGGA | MSTSTQTTITKMTQTVYVRFSYDDKVSEEVPINVGLDLSKNSNRKRLLNRLLKSNPNITEVSFIK* |
Ga0073913_100016457 | F070113 | N/A | MTLTKEQFAQFVENYVSHIVEGMDVESLEMMVFDLLVKEYKTYTEEEIVGEITELYGEEVAADLMEVA* |
Ga0073913_100016458 | F068809 | GGAGG | MNFLTPDDLNALIELVETNNQYNDEDDKEFWNDVLIRLNQTSRHCLDV* |
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