Basic Information | |
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Taxon OID | 3300005941 Open in IMG/M |
Scaffold ID | Ga0070743_10000273 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20006 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (68.75%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000376 | Metagenome / Metatranscriptome | 1216 | Y |
F000473 | Metagenome / Metatranscriptome | 1097 | Y |
F000671 | Metagenome / Metatranscriptome | 945 | Y |
F007921 | Metagenome / Metatranscriptome | 342 | Y |
F012975 | Metagenome / Metatranscriptome | 275 | Y |
F014017 | Metagenome / Metatranscriptome | 266 | Y |
F016396 | Metagenome / Metatranscriptome | 247 | Y |
F021988 | Metagenome / Metatranscriptome | 216 | Y |
F073544 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070743_1000027313 | F014017 | N/A | MGDLSTYLDEKIRQQIADEIRYLELPPEWRPFEVIRYIVRIIEKSNG* |
Ga0070743_1000027320 | F016396 | AGAAGG | MRKSERLRLLEMQVVRLEMMVELYTQTLSNLLESQGLSSPTQLDAGKWYKAKLDKLDNE* |
Ga0070743_1000027324 | F000671 | GAGG | MEKILCYCCNKTKNKLNLKKSVLIPINLFMCETCISSKFEPRWVIILAGRQLGSDSVKEFIIKKRYHGNDIAASELLV* |
Ga0070743_1000027325 | F073544 | AGG | VREYYEVINIVFIHEERLWGTCDSLGLYASKIKYQKDGIEYEDMFDNEEFTVMEEIVLEHSEEEN* |
Ga0070743_1000027326 | F000473 | AGG | MEFINKDKDHFKHGINLWNGEPNKAVFYTKEMSTKIRELKKPVIDLQLDVVQYPEFLAVRLYEDNFIQYEGIKKEQVIDYVGKVKKLIESYGVRCELEGVPSARILRSN* |
Ga0070743_1000027328 | F012975 | AGGA | MLNLTLKGVEVFMERSKHNKQESYWENYDLLIWKKDPGGFTNVKGMFRKDSWGIAERVPVNENGIWKLPKHYVKYFK* |
Ga0070743_100002734 | F007921 | AGGA | MIDWLVNRIFRWDSLRHAIFDEVRMYDELDKRIKEYKDEEPTNLTWSEGDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWLREADEAEAK* |
Ga0070743_1000027347 | F000376 | AGGA | MSTYQEKAKECKCCGKHVPLPTILKEYNGIVLCPTTFSNVVEYKRIWVSFGKRPMGNIRKHFSEYVQQIVEETIDKNEDGTL* |
Ga0070743_100002739 | F021988 | N/A | MSNFKKDDGTGMVTPPAAGSASGAVTSRETPKRYPRQGLKVDTNKHGIRRETNLNQPPSKKGRPKKV* |
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