Scaffold Ga0070743

Basic Information
Taxon OID	3300005941 Open in IMG/M
Scaffold ID	Ga0070743_10004971 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005941 Open in IMG/M

Scaffold ID

Ga0070743_10004971 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4797
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4797

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F028781	Metagenome / Metatranscriptome	190	N
F035227	Metagenome	172	Y
F056337	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100049711	F028781	N/A	MIKSFKLFVASVLVSVAVFAADTEPTVNASINAGYNNHYIVNGLAKTSGSAFAGFDIGKTYFGVDGYVGGVILPDSNSIDESHWKLGVGKALKISEKFSLRGDLQVLRHQSSILGGRNSTEIAPKIALVNPYLTPYIRGSHDFNLGQ
Ga0070743_100049713	F056337	N/A	MSDKYENNSYDAVLSRMEQKLDTIVENVDGIKKSHADLDKRVSNLEFFKYYLTGMMAIITIGANYLMTKLKGES*
Ga0070743_100049717	F001732	N/A	MTAKLPIFIILVFLFTGCFSTIKPSKQIDDNQKIIAKEEKKVDNTLVEIEKNDKGKKIQTSGLSIGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERKKGEELLTQRDELINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFIVSALTAILVFVVVFVLLRLLATVHPAAAAAFSIFNMLGSAIISILKALTPKAFEMCDFATKDKVDEFKSPLVKIVDVIQELKVKQKESPDRVYPLNELLKRFEKEMDSDEKDLIDNILREQKWIK*
Ga0070743_100049718	F035227	N/A	LKKAQIVNDNSSNIHRAVNIFALSNKDIKKYSLVKIGELFEKNDYVLLYDDQYVKIGDGNRLLKIKITKENSVYRKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070743_10004971

Overview

Ecosystem & Geography

Associated Families

Sequences