Scaffold Ga0070743

Basic Information
Taxon OID	3300005941 Open in IMG/M
Scaffold ID	Ga0070743_10011597 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005941 Open in IMG/M

Scaffold ID

Ga0070743_10011597 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3109
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

3109

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F002387	Metagenome / Metatranscriptome	565	Y
F007468	Metagenome / Metatranscriptome	350	Y
F009685	Metagenome / Metatranscriptome	314	Y
F013184	Metagenome / Metatranscriptome	273	Y
F013414	Metagenome / Metatranscriptome	271	Y
F033433	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1001159710	F000852	AGGA	MQTKREYLKQQGITVGVRGRFSGAAKVALQEAISKGVTFSDPQPATKKAK*
Ga0070743_1001159711	F013414	AGGCGG	MKTREIKVAEQLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYNDELTTESGIYNSGLTSEGLFLANELNETLTKLIKTYKWENIKLPVDPDKVIAKLPKVAEQSYRHSWLHDKDHRDPVLVSHPFI*
Ga0070743_100115972	F002387	AGGAGG	MASFLEDVNQMVIDACYQEIAEQLLEQWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKEGDEDYFEQV*
Ga0070743_100115973	F013184	AGGAG	LNKYDFVIKLAGSVMANNEKEAHNKINAHLDDLGEVDSTRYDLGWPDVSWDMEYELC*
Ga0070743_100115975	F007468	GGAGG	LTTQTKSSKFIEYMKIHLISLNQDLESDYNVQSKINIQGQIMATEHLLSVATDIMNDNLQGKGY*
Ga0070743_100115976	F000263	GGA	MNAEDIGLPPHLQRLVNAGVTGLDIMHGELKNLMLIAEQELADAQAIEDETEEAMDSMARTEATGRLDTLVELYQLTYQLSFAIGEAYDRELKAGMK*
Ga0070743_100115977	F033433	AGCAGG	MNNKTSLEIVEVNYSCSPGGVDEFEVYSLDERDLHNPPIYSSTELEKAVRFCYELGKDFTVRTVAEWEERELAYEASR*
Ga0070743_100115979	F009685	AGGAGG	MKMSDQHIDAVLAEAQGLLWGGSETENIAAHNLISKLIQDRMEEKNLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070743_10011597

Overview

Ecosystem & Geography

Associated Families

Sequences