NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070743_10020785

Scaffold Ga0070743_10020785


Overview

Basic Information
Taxon OID3300005941 Open in IMG/M
Scaffold IDGa0070743_10020785 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.697
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2287
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037722Metagenome / Metatranscriptome167Y
F057107Metagenome136N
F057309Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0070743_100207851F057107N/AKQNNQADYNEFLKGSKANLLAVGKERILEARRLAFNHIDELPPHTLEWGLAYIFSFAEWIPYD*
Ga0070743_1002078510F037722GGAMTKHEIGATIGFYIVVGLMGWALVSFFPLTWGQALIISWMYNKLTDVLE*
Ga0070743_100207855F057309N/AMMNPLLQKYEELYGKKEKPKLPRIEDYEGEETFADELKKSKPPTLKSYDLDDLKTSFQQVAEQLQNDEAQVISMNMEFGDHMNKITFEVYVYKP*
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