NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070743_10022957

Scaffold Ga0070743_10022957


Overview

Basic Information
Taxon OID3300005941 Open in IMG/M
Scaffold IDGa0070743_10022957 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.697
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2168
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022391Metagenome214N
F053660Metagenome141N
F054042Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0070743_100229572F053660AGGAGMAKRGYERNETPVGAGRDHPNTRLIRWVGDRTDLGLVKNETYTWSELGAAVGIVASSMRGRVRGAPEVQDCHMWANGTRKPKEEWGVTTIVRCESKADKISQKYLRMKL*
Ga0070743_100229573F022391GAGGMTQGDYVKVSSTNEVDDKLKHLESRIRGWNYQSPLAIKLMPFTDPTSLSQEALFNIWCREIADQMKKKAPEADAEAWKLWLKHKFLGTYAVKVGRESIEGQVYATPKGKGKMATFMHSVLVFADDKLRVRLSVPRNSEYVKVRENEQAKESKQKAKEEGNHPAGSGKGGSATAKTGSAKGEQQIGLL*
Ga0070743_100229575F054042GAGGMNTPFIQIVYEEIEEYGLEDHKLKLFNLMEAALNGASGKARKEIDELWLEIQEYKVQLAIPPNEEELMLQHPTMSV*
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