NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070743_10025381

Scaffold Ga0070743_10025381


Overview

Basic Information
Taxon OID3300005941 Open in IMG/M
Scaffold IDGa0070743_10025381 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.697
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2055
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F009685Metagenome / Metatranscriptome314Y
F013414Metagenome / Metatranscriptome271Y
F050154Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0070743_100253811F013414AGGCGGMKTKEIKVAEDLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYNDELTTDTGIYNSGQTSEGLFLANELNETLNRLIKTYKWENIKLPIDPDKFIKKLPKVEEKSYRHSWLHEEHRDPVLINHPFI*
Ga0070743_100253812F000852AGGAMQTKREYLKQQGITVGVRGRFSGAAKVALQEAISKGVTFSDPQPVTKKAK*
Ga0070743_100253813F009685AGGAMKMSDQHIDAVLSEAQGLLWGGSETENIAAHNLISKLIQDRMSEKNLK*
Ga0070743_100253815F001019AGGMTYEPSLEIVEVEYSCSPGGIDLFEVYDKSDIPLSVPIYETEELTKAVLFCYNLGKDFTVRTLAEWNERELAYVN*
Ga0070743_100253816F000263AGGMETLYKDDELPLHLQRLVDAGVNGLDIMHGELKNLMLIAEEQLAWAQAIEDETEEAMDSMARTEAEGRLDTLVELYKLTYDLSFAIGEKEGQKV*
Ga0070743_100253817F050154N/ALNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNENERV*
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