NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070743_10026726

Scaffold Ga0070743_10026726


Overview

Basic Information
Taxon OID3300005941 Open in IMG/M
Scaffold IDGa0070743_10026726 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.697
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1997
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000714Metagenome / Metatranscriptome924Y
F001125Metagenome / Metatranscriptome769Y
F068816Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0070743_100267261F068816AGGAMPNWVYNTLTIQGPKSEIDFIKDKLNQPFKVLHDSWNMKTNEMEVSESIYSAPVFAFWNIHSPLEDGITMEEYVKQPTRLGTDTNAPDWFAKEIAHAKTQTDWYNWNTSKWGTKWDV
Ga0070743_100267262F001125AGGCGGMGDRANFGFKQSDGNTIFLYGHWAGHEMLANLASAVSAAEPRWQDESYATRIAISNLIGDDWAHTTGWGLSVGRILDNEHKIPVINWTAKTFTLYEEDLSTVVFSLSLQDFCTKYSRLVMV*
Ga0070743_100267265F000311GAGMYFELTAPNKLSFEMAYWDAQIIGLDPHVLSALTFNVGTGSIEKVSKIRDKHNLIESYVSDYEPTGYTGR*
Ga0070743_100267266F000714N/AVTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKQANMYSSKIDTVKDIITEAYADSEDQETLRAIAEALSIELIREFEFTASIEVSGTYSYNILENDYDLDLESEVTDALFADSQNGNIEITDQEVCNVSER*
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