Scaffold Ga0070743_10050208

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070743_10050208

Scaffold Ga0070743_10050208

Overview

Basic Information
Taxon OID	3300005941 Open in IMG/M
Scaffold ID	Ga0070743_10050208 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1423
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F001125	Metagenome / Metatranscriptome	769	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100502081	F001125	AGGCGG	MGDRANFGFRDSKENIIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLINEEWPSETGWGLSVNEIGDNEHKIPVIDWKNKTFTLFEHDLHTPVFSLALDGFVSKYSSQPSMV*
Ga0070743_100502085	F000714	N/A	VTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKQANMYSSKIDTVKDIITEAYADSDDQETLRSIAEALDIELTRTVEWSATIEVSGTLELDLLGDYDTDVEQEIYDNLNVDSQNGNIEVVDQEVTNVREN*

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