Scaffold Ga0070743_10079178

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070743_10079178

Scaffold Ga0070743_10079178

Overview

Basic Information
Taxon OID	3300005941 Open in IMG/M
Scaffold ID	Ga0070743_10079178 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1110
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025742	Metagenome / Metatranscriptome	200	N
F039484	Metagenome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100791782	F039484	N/A	MIIKNPDKLLKQWIPGTNGDIWFVDDVSVTMDSHGTAYIFRCITEWPVKTSPNQQYYHSTRRIHTVVTLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMDKFILVLADLLPNTNSL*
Ga0070743_100791783	F025742	N/A	MLTIKNEDKLTGTALTGAGPDGPIAWHVSGMGGSLHHYIIYLTRDDNGWERKVTLDRYHSVNQTGKQYKLECGTEHMHLYKSTMENMDNFKNYLEYFI*

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