NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070742_10000739

Scaffold Ga0070742_10000739


Overview

Basic Information
Taxon OID3300005942 Open in IMG/M
Scaffold IDGa0070742_10000739 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.757
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8575
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (22.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F027408Metagenome194N
F079655Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0070742_1000073917F009003N/AMKAKDKAWQLYSNYFDIIENGKQEGNLADVHIKAINSALHCVDEALINAPSEIMQDFEGTGEFYSVKAYYHHVKNEILKMNGSKENALNRRAESRAN*
Ga0070742_1000073920F079655N/AMTQEKKETAMRRLSKALRKRFQGPSVNITWIELDAFMMKAQTWELENILNSYTEGYTDCQNGLPNKAENESNTNV*
Ga0070742_100007397F027408GGAGGMKQYDKQRETELLRKLFVITARRSMRPAMSDNLTMRLIFEELHLLTDKDEYKL*
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