NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073926_10057940

Scaffold Ga0073926_10057940


Overview

Basic Information
Taxon OID3300005943 Open in IMG/M
Scaffold IDGa0073926_10057940 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)756
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002149Metagenome / Metatranscriptome589Y
F021730Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0073926_100579401F021730N/APAQTTSADYVDFGIQSNGTSVGTFDYISSVRTRDMDFSDPFAQKHGSNFEIIFDDSYSSNATIAIQRDSDVSDVEVQPNLNIASTVLVLPFVLPAVLPTSVKKRIASDLRKYEKWRLINISVTSEANKMAVRQITAAANPDTIEVQKTI*
Ga0073926_100579402F002149GAGGMTAVEYIEESGVPESMWPNLAEWYGWFEKQGMVGVVKDGEEIAGVALARCLKDGQEPEHYEHTEDGENVFVDLTISSKGAKSLNCLLLLLWQRFGPRKRITFN
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