NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066381_10203789

Scaffold Ga0066381_10203789


Overview

Basic Information
Taxon OID3300005945 Open in IMG/M
Scaffold IDGa0066381_10203789 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_AAIW_ad_876m_LV_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)569
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013775Metagenome268Y
F041256Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0066381_102037891F013775GGAMVEKRKYETVKDFAKDYRTEIIPMLKSKGFTLSISTSKGSYWNDGRMNFQIKKIPNNFYVWTNEYSRYNKTEKSNKLLEVIRDRVRNLLLSTDLDVDLNFDYHK
Ga0066381_102037892F041256N/AENDRHIGDITFLYSVGTALDKVSGDTFPMLVGGAIGFDERMNLMEMDNSDDSWEWYNSLAFGDKLVVDEVMDELSYFEYVLGDK*

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