NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073922_1010513

Scaffold Ga0073922_1010513


Overview

Basic Information
Taxon OID3300005955 Open in IMG/M
Scaffold IDGa0073922_1010513 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009682Metagenome / Metatranscriptome314Y
F059659Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0073922_10105131F059659AGGAGGMGMYNSVDCQYPLPMPEDPKGYTGSHGFQTKDFECALDVYIIDKDGQLLIERRDSEWIEGDPNGEGFLSKIGHVKTIKTWLEPLTNTCTIQFYDYIDSNKTDYDYFITYEAVFINGKMSSVKITHFEANDNAKRKIRDIEFAEKNKENYQFRQTWQYKYFVKPYNITIRYIFS
Ga0073922_10105132F009682N/AMIKDLYMKNINDKILVQSDDLKYDGKNIIIPSYYASIVYDYLDNVNIKDMNLNDADMHDYLAFCSFFEAIIDHKADKGGN*
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