Scaffold Ga0081534_102382

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081534_102382

Scaffold Ga0081534_102382

Overview

Basic Information
Taxon OID	3300005959 Open in IMG/M
Scaffold ID	Ga0081534_102382 Open in IMG/M
Source Dataset Name	Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4777
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Monarch Geyser, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038746	Metagenome	165	Y
F067919	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081534_10238210	F038746	AGG	MIRKGNKYIMIIKTPKDLEDIRNNIDKYKNELKDGELIEVQIAKSAKYMLKMTLSKEGIKYEISGDDKKHVLTIENKEDAVALQKLIQILLAIAFNKPN*
Ga0081534_1023828	F067919	AGG	MTARSLSRGKELILINKGDEIEFLIDNVDDGRVWVIKPEYHVKKGIMILEKRNGYIIRLIEKDLRKLGVRNMNELIELIRTRPSETVESLIGEKVKISKVTVKDLGSLNAEE*

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