NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081534_102835

Scaffold Ga0081534_102835


Overview

Basic Information
Taxon OID3300005959 Open in IMG/M
Scaffold IDGa0081534_102835 Open in IMG/M
Source Dataset NameHypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4221
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Hypoxic/Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameMonarch Geyser, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062912Metagenome / Metatranscriptome130Y
F077497Metagenome / Metatranscriptome117Y
F087443Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0081534_1028353F077497N/AMDQEQINKIEEIIEEILERHLFEETNNPDYELKKMDVIVKYLIYQQLKELNNNLGLIDEALSIKELEK*
Ga0081534_1028354F087443N/AMGQKSIGPKKNYWMVFRDGDNVDYIEKEITKAALDLNKDVLEMRAWIFKAFVYDPEVKAKIIEYIKKNGSGTNQ*
Ga0081534_1028355F062912N/AMQCKKFINFDLHIYSMDPQVILAETYNLFSVSDIIENGSEIDRELEGLLADRDYDNMAKTIIYALMHTLNNDPAYRNIRQIYFNDAIDLLYMIDRMGFNNERIMKKFINLLYQFYSYSLQYKIQFIVDKEKRELVKAKLDELIHII*
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