NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066364_10001440

Scaffold Ga0066364_10001440


Overview

Basic Information
Taxon OID3300005960 Open in IMG/M
Scaffold IDGa0066364_10001440 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6346
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017147Metagenome / Metatranscriptome242N
F020191Metagenome / Metatranscriptome225N

Sequences

Protein IDFamilyRBSSequence
Ga0066364_100014402F020191N/AMSNNVIKNVYQNSLYQKILHEINGVIFPLSDQWKRIGISVSGGLDSALMSVLLCSIITQNLWLTKVHIITNIRCWKTRPWQRQNSLDVYNWLVKSFPNIEFKRHENFIAPDLEWGSKGPNIIDEYGKLKSGNQIELRSHAEYVAHTEKLDAWFCGVTQNPDKEFDERLADRDVFIDSLGDKTLDRLIKPHMGGYACHPFTYVKKDWIVAQYKKLGIMDLFDLTRSCEGDADIYPEVFGDLDYKTYVPGSPVPTCGKCFWCKEREWGVANSDKE*
Ga0066364_100014404F017147GAGMPKWKNFYKFKGGLAVTNLLYEPLVSKDKKIFCMNWNKNQYHDNEFMTEELYNFWFNQELKYLLHLSNKKYIPEILLIDTKKRVIEFRWYDKNLNVMIENNTINKIKNWQKKIKAIKDDLENDNIFKINMYPHTFFFDDEGNAHIMDLYGCTDKHTRYLDTKYLKPLIRNKRFDKFIMNERLDTHKLYQETIKTNYAEWPGDFLNA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.