NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081529_111482

Scaffold Ga0081529_111482


Overview

Basic Information
Taxon OID3300005964 Open in IMG/M
Scaffold IDGa0081529_111482 Open in IMG/M
Source Dataset NameFerrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4214
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameEchinus Geyser, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7220558Long. (o)-110.7021057Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N

Sequences

Protein IDFamilyRBSSequence
Ga0081529_1114822F011097GGAGGMIRDVVLYTSGGTDPFTNLPTSGGAAGGNYSVGQLLRFHPNYARLLIFITGLSGTSPSIQFTVGSYYGSNNYTLPPITSPQYVYIIGNENKTIITYLNTSGQVLQQVELPYNIFLNGVNVSWSLSGTSPAVSVYIHFEFEDEEEDE*
Ga0081529_1114823F008949AGGAGGMSSQTVQLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPVNQTIDVKFICNKYKQVPSTNPLSPPTTVQKSIQECVDEWFDQHKSVYEVA*
Ga0081529_1114825F021133N/AMTRRDELIRQIYENGNYAIKKICEMEPDDNMANFSATDCIIGTANTHLALKIAKEKGYPQDVIEYLENQSRQEQWHCRLHIGKPPKPYDFIVAQKHREILLKHGIYVWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIVELQKEYIAEIFKLK*
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