Scaffold Ga0081529_123672

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081529_123672

Scaffold Ga0081529_123672

Overview

Basic Information
Taxon OID	3300005964 Open in IMG/M
Scaffold ID	Ga0081529_123672 Open in IMG/M
Source Dataset Name	Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2982
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Echinus Geyser, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7220558	Long. (^o)	-110.7021057	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026606	Metagenome / Metatranscriptome	197	Y
F052043	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081529_1236721	F026606	N/A	MEGNEYEKIEQKLEEFIGIEAGELRDEIIEKAVWLDKDYSKMVVLRIYSDGSYDVGIGQEGSNDGLSNEERLWVEFSLIEPWDLPEYETVIENEDGEGYIDSDGFGYDVDELLDAVKTSVSSGFYDDFEYEWKKFLKEFDEWCEALKGNGE*
Ga0081529_1236722	F052043	GGAG	MNENSYQRLKEIISELDYIFKKGKLALIKANGYDYVISGYHVSKNFIMFYFGKDFLDAYHYLDIQEIKELM*

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