NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081474_120772

Scaffold Ga0081474_120772


Overview

Basic Information
Taxon OID3300005977 Open in IMG/M
Scaffold IDGa0081474_120772 Open in IMG/M
Source Dataset NameFerrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)15255
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (52.17%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameOne Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7330426Long. (o)-110.7089928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F023140Metagenome / Metatranscriptome211Y
F030159Metagenome / Metatranscriptome186Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0081474_12077218F021133AGGTGGMSKRDDLIRQIYENGNYVIKRICEMEPNDDMANFSATDCIIGSANTHLALKIAREKGYPQDVIEYLENQSKQEQWHCQLHIGKSPKPYDFKVAQKHREVLLKYGVYVWMGVMPLLGEKIALAKAICWRRNDDPHFANKFATVDEYYHTTYPLLLLYKYASEEELEKIVELQKEYIEKIFNL*
Ga0081474_12077219F023140N/AMFIGLVTVPVYIVLKSFPFLAVFGVGVLTTLTVLILFFFFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLTYHVTRWLYVKKGRLNTPNLRER
Ga0081474_12077220F076262AGGTGGVSFNPVIRGSYTLASPQTVSVAASGSATVSISFTPLGAGSLYVYITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGNITINNSNTTAVSVVVWALFIEVA*
Ga0081474_12077221F008949AGGAGGMSSQTVTLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPVNKTIDVKFVCNKYKQVAVPRTDPLSPPVFQTVQKTIQECVEEWYAQHKSVYEVA*
Ga0081474_12077222F011097N/AVIKIIRDVPLYTSGGTDPFTSFYSLPTGGSPITANGSNYQVLRFHPNYARLHIYITSLSGTSPSIQFTVGSYVGANYYTLPPITSPQYVYVVGNGNKTIITYLNTSNVVLQQVELPYNIFLNGCYVSWSVSGTSPSISAYIHFEFEDEEEGGE*
Ga0081474_12077223F030159N/AMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYLDKSAISPKGKTLVTVPPLIFGQTSPGGSYYVISGYNSFNTIYRGVVAHTFGKKYARVYLNINAINAGFVNIYTRYRSRSAPDLQQMYGNSPSSNSTYQPVLEGNFGTLVYATDYSYNMPYNLGYSRTSKFRVDGQVLWVNIRQSSSPAFIELEGD*
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