NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081474_122090

Scaffold Ga0081474_122090


Overview

Basic Information
Taxon OID3300005977 Open in IMG/M
Scaffold IDGa0081474_122090 Open in IMG/M
Source Dataset NameFerrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)16579
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameOne Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7330426Long. (o)-110.7089928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011233Metagenome / Metatranscriptome293N
F026924Metagenome / Metatranscriptome196Y
F027904Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0081474_1220902F011233GAGLAIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSSEYTVLNGQFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGELRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPTPTGVPPRFVAEEVVSTRLPVKVS*
Ga0081474_12209024F026924AGGTGGMSVSKVCWRQHYKFEASKIVHLGRHGFHIPVIVYGRDSEPEKAQEDLCINVVGIYEPIGSFRENQLILPPKKGVKVEDEGGGRISKG*
Ga0081474_1220904F027904GGAGGVEQKYEPPDYDLFNLNNGSTSIGTTAVTLLYEGQSNAAVYAPPDLTLRVKQVIIQNTTSSPITVQLLAVAAPNTTLPSPIPKTPPIPVNANSAVTLSEDEWSISIKAGYALAAVSSAASSANVFAKCYFTKGTGSPA*
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