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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005977 Open in IMG/M |
| Scaffold ID | Ga0081474_123884 Open in IMG/M |
| Source Dataset Name | Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4875 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.7330426 | Long. (o) | -110.7089928 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F063848 | Metagenome / Metatranscriptome | 129 | N |
| F076264 | Metagenome / Metatranscriptome | 118 | Y |
| F087445 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0081474_1238843 | F076264 | N/A | MDLYAVGGMSAISSAIQNMVNGLQNLFVALIDVFGNAINAIGNTLASLANPIGYLVGVLAVFGSLIAIIYYVFRGRGGVSGLIGGIRNFFTSFF* |
| Ga0081474_1238846 | F087445 | N/A | MSASPVKPGDELIQRLLNMSEYDLKRVFKMIPIDKRLMLALDTIQEYQNLRSKFDNLFNAFAMNSPKVKEVMENAKKNRKPLDRLADMFMDLIETMLKSKAMTLTDEDREKLREKVREMIESEE* |
| Ga0081474_1238849 | F063848 | N/A | VAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSASRRNQRAVNGFAILKQVQQTVSDYLNEVSEAMKKPIVAQLRVEFLGIAMAFLKASNEGLNSYALTGRMAQIATLKATDIIHTTTLTCAEVGEIINGMLKKLSGVTADPLTFTEDDGICEATVANPLTKLSVASASTGYTVSLTDILKAKTPEEVLMAK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |