Scaffold Ga0081474

Basic Information
Taxon OID	3300005977 Open in IMG/M
Scaffold ID	Ga0081474_127368 Open in IMG/M
Source Dataset Name	Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005977 Open in IMG/M

Scaffold ID

Ga0081474_127368 Open in IMG/M

Source Dataset Name

Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	30207
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (54.55%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

30207

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (54.55%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7330426	Long. (^o)	-110.7089928	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

One Hundred Spring Plain, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.7330426

Long. (^o)

-110.7089928

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081474_12736838	F075084	AGCAGG	MIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYTQYNGVPCDLVSVFTVETTYADILHMIVNYNSENVSKVLTKMTEMCSTYEVR*
Ga0081474_12736839	F080245	N/A	MIFVWSARVVIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT*
Ga0081474_12736840	F087442	GAGG	MMREGLVKAGNLVVDCKPCYVAGTGFTKDDIYVISEGTVMFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNENCLATRL*
Ga0081474_12736842	F076263	GGA	MPSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRNGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEELWGGK*
Ga0081474_12736843	F080247	N/A	MIIWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKERDIYANVSLTDPDTIKEFITMSTYYRKYGVSIPNVLDKIMYRKVPT*
Ga0081474_12736844	F061983	AGGAGG	LKKYVFKVKVVQIKLINEEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFNCYYGDVIDVEKLKDVGAIVVKESDGEPLRTMKTLVAKWYNKKLVEEEKAYEVCNTFVT*
Ga0081474_12736846	F085905	N/A	VEEQLSFPSSRLSQFDYVGMNAYWLNARLKYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDSLFIVALTHYFNVKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVMARYLLPYSVLEVIRRHLKK*
Ga0081474_12736850	F087445	N/A	MSTASSKPTDELVQRLLNMNEYDLKRVFKIIPIDKRLALALDTIQEFQSIQNKFSNLLNGLAMNAPRVKEVVENARRNRKPMERFVDMIMDMVETMLKSKAMSLTDEDREKLREKVKEMMESEE*
Ga0081474_12736852	F076264	GAG	MSAISSAIQSLVNGLQSLFVALIDVFSNAVNAIGNTLASLANPIGYLIGVLAVFGSLISIIYYVFRGKGGVGGLVSGIRSVFTSFF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0081474_127368

Overview

Ecosystem & Geography

Associated Families

Sequences