Scaffold Ga0081538_10007956

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081538_10007956

Scaffold Ga0081538_10007956

Overview

Basic Information
Taxon OID	3300005981 Open in IMG/M
Scaffold ID	Ga0081538_10007956 Open in IMG/M
Source Dataset Name	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9069
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location Name	University of Puerto Rico, San Juan, Puerto Rico
Coordinates	Lat. (^o)	18.402889	Long. (^o)	-66.050054	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003047	Metagenome	510	Y
F060326	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081538_100079561	F060326	N/A	LVAFILSLVQDKLPELGLDLLVYLFATTLAVFVIGRMLAWREGRRWIVAKDWLHMILLETIDDLLRVLLPAAVPRGGVETDEKVTVYEVAGERIHFGETVAYSPLELLVSPGEKDLQSHISWYVSELGPPRYAELARAALSDAREQVRDMLATSGQLLEADITAMVMSFDQAIAAAIRHVDSAASMRNERLEDSPFHDGEVSTTQSEADRELTFVTSIIVESVVDSAIKPKAWLENEIVNREGRSPFRRLRA*
Ga0081538_100079568	F003047	AGGAG	VINDALIEEINAAYRRLGAATEDLASADRELAEYVRRVRLDNAEAILEARNERTASLYLDGLLDTHEHRRLEADRARADLALQHARREVERLQLIVRLLGTRPSEGILG*

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