Scaffold Ga0081538_10083473

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081538_10083473

Scaffold Ga0081538_10083473

Overview

Basic Information
Taxon OID	3300005981 Open in IMG/M
Scaffold ID	Ga0081538_10083473 Open in IMG/M
Source Dataset Name	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1688
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location Name	University of Puerto Rico, San Juan, Puerto Rico
Coordinates	Lat. (^o)	18.402889	Long. (^o)	-66.050054	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003229	Metagenome / Metatranscriptome	499	Y
F006197	Metagenome	379	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081538_100834733	F006197	GGA	MWLIEGTGSPREVRLPPGYSLDRSDPDVLVLRCPHGTAIARFSARGATAEAIEHEARTHYRERNRTA*
Ga0081538_100834734	F003229	N/A	RDPSRSRSQGANPKVRHDQPTTTVAILGCDTVVGRSLCILLEGSGYKTTLLDSYPTGVVDELLEGAHLLILAPRVDEGVREAFLGAMGKRTPQRADIPVIALSTAPEGELPEEEGVQNVPWPCETKVLVDHIEASLLDSPAASTSTTRQDRKGWEPHEPS*

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