Basic Information | |
---|---|
Taxon OID | 3300005983 Open in IMG/M |
Scaffold ID | Ga0081540_1000463 Open in IMG/M |
Source Dataset Name | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 40235 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (78.26%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | University of Puerto Rico, San Juan, Puerto Rico | |||||||
Coordinates | Lat. (o) | 18.402889 | Long. (o) | -66.050054 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000171 | Metagenome / Metatranscriptome | 1783 | Y |
F024244 | Metagenome / Metatranscriptome | 206 | N |
F037341 | Metagenome / Metatranscriptome | 168 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0081540_100046316 | F000171 | GGAG | MPAIIAAVLIALAVLIVLSFTAHFLFSPWLIALAIGILVWIKFRPRRSDR* |
Ga0081540_10004632 | F024244 | GAGG | MSLVAATWAVAGVTLLLVVVAALTARFAVMAFRTQAEEVSDQKDLIKQQSERLEIQRKHLQSDEAARQVDRVLSLHAEFSTGEIAAARCRFSELMWRAGETAFGLHTCWRPTWDSIYPPCPGCGEEINRSRFLGAYPADMHARDHRPIHDLRKVLWCLGRVNVARRDEKDSLREQLVVALLGWEVIWWSLVCERLERTQGAILQPLDNLASWVQEWNWLEDREFDPHRAFRETEAYQDKEAFLEELVSKRSF* |
Ga0081540_100046331 | F037341 | GGAGG | MQPPTITRPAHLATHRPVEEQTAEGKTRISCVAARCAAWDPWPCQSRREAQYWYERHISQPLTHHL* |
⦗Top⦘ |