Basic Information | |
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Taxon OID | 3300005983 Open in IMG/M |
Scaffold ID | Ga0081540_1001374 Open in IMG/M |
Source Dataset Name | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21111 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (88.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | University of Puerto Rico, San Juan, Puerto Rico | |||||||
Coordinates | Lat. (o) | 18.402889 | Long. (o) | -66.050054 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001184 | Metagenome / Metatranscriptome | 755 | Y |
F001552 | Metagenome / Metatranscriptome | 672 | Y |
F031477 | Metagenome / Metatranscriptome | 182 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0081540_100137412 | F001552 | GGA | MRVVVTRIDWDGTMRRRAVDTAGRSDAGRWEELIARALAVRPPYRPAPGGPVYHLRVDEGAVLVAEHDLSGALSDLVTAVLAIGEAM* |
Ga0081540_100137414 | F001184 | AGG | MTSPYDASSPKAAPPADHAGSVLCRLLMDHPEVVDIEILGQLDLPEGIIYSLGVMLPDGRELLIDVGDV* |
Ga0081540_100137422 | F031477 | GGA | MEPEIAGLVRVFNSLTTKQQDGAVRTLSEYFNADSQRRQQLINESQPDRRGKKINLGPVSGVCPYCGR* |
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