Scaffold Ga0081540_1032044

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081540_1032044

Scaffold Ga0081540_1032044

Overview

Basic Information
Taxon OID	3300005983 Open in IMG/M
Scaffold ID	Ga0081540_1032044 Open in IMG/M
Source Dataset Name	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2876
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location Name	University of Puerto Rico, San Juan, Puerto Rico
Coordinates	Lat. (^o)	18.402889	Long. (^o)	-66.050054	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001751	Metagenome / Metatranscriptome	642	Y
F004085	Metagenome / Metatranscriptome	454	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081540_10320443	F001751	GAGG	MLEVTNENFARLLRGLTIAVGNRRNRVLLYQFLAAEIRALHCSYGVGDDESYKRALTFLENCERYTLRSLVRRSAKHHAEVTVDHAKRVFSRALKKLDSSQGHNPTLRAMIVYLLKQEPLEANSQPSGNT*
Ga0081540_10320445	F004085	AGGAGG	MGKILFSLTVATALLALASSGASAFIYSSFVCQAVGTRSVDWGRSFFVGDAKMIALSRCARRSGICTISYCVPGY*

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