NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075152_10023622

Scaffold Ga0075152_10023622


Overview

Basic Information
Taxon OID3300005986 Open in IMG/M
Scaffold IDGa0075152_10023622 Open in IMG/M
Source Dataset NameWastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 C2 DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3846
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location
Location NameMilwaukee, Wisconsin, USA
CoordinatesLat. (o)43.023Long. (o)-87.895Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003908Metagenome / Metatranscriptome462Y

Sequences

Protein IDFamilyRBSSequence
Ga0075152_100236224F003908N/AMTMQEMVAADPLPLSKGAKWTYKISVLRYEPEKDAEVKQELDWATEVVDVKEANGVTAYVVKGWPTDLMDFDKVPVASERTILRSDNNFLWSEKSEPSLDDAEGWFTWPLIDGQKICPSAETTYCWQVSAIETGYAMSFYTGPDEVLYELSPGTGVSRFRYLHHGTTNTVEAKLVSFKKGTGK*
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Institute for Fundamental Biomedical Research
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