Basic Information | |
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Taxon OID | 3300005995 Open in IMG/M |
Scaffold ID | Ga0066790_10098943 Open in IMG/M |
Source Dataset Name | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1253 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom) |
Source Dataset Sampling Location | ||||||||
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Location Name | Alaska, USA | |||||||
Coordinates | Lat. (o) | 68.6135 | Long. (o) | -149.3144 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004185 | Metagenome / Metatranscriptome | 449 | Y |
F015081 | Metagenome | 257 | Y |
F071728 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066790_100989431 | F071728 | GGAGG | MNRPDLAVRQVHLRVNKIAFESVRVRHDHRSRDFDIVIDDPHIGRFALTAAVPSLELRDEDSDWRQVTLDELKKILADDGELADAAEEPQASETAERESFNRLVAEGEHIMNAE |
Ga0066790_100989432 | F015081 | AGG | VHPYYSGDKEIGLEDLIQEQRSLARSKNPFERVVGSLCIGAILKEQLVRLPNSTISQLMTDNIWCQLNLLAPESVIVEIVSERLVEKREASLVCPECGEGLRRTDE* |
Ga0066790_100989433 | F004185 | AGGAGG | MSLEKEFIRDGKRRIIGSVTSGYVGSFETIVRDEQNHITGSTSERFNTTRDEHGSLVSINTADPGLLIEQKK* |
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