Scaffold Ga0081606_1000589

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081606_1000589

Scaffold Ga0081606_1000589

Overview

Basic Information
Taxon OID	3300006001 Open in IMG/M
Scaffold ID	Ga0081606_1000589 Open in IMG/M
Source Dataset Name	Earthworm egg capsule microbial community from the University of Washington, USA - E. fetida Yelm (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14022
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (36.36%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Reproductive System → Egg Capsule → Unclassified → Earthworm Egg Capsule → Earthworm Egg Capsule Microbial Community From The University Of Washington, Usa

Source Dataset Sampling Location
Location Name	University of Washington, USA
Coordinates	Lat. (^o)	47.0	Long. (^o)	-122.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077889	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081606_10005891	F077889	N/A	MSNSINFYEFTGFITFNIEVHELVCVYNFLVDRVLVANVPHATVRRH*

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