NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066368_10038369

Scaffold Ga0066368_10038369


Overview

Basic Information
Taxon OID3300006002 Open in IMG/M
Scaffold IDGa0066368_10038369 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1676
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007138Metagenome357Y
F027810Metagenome / Metatranscriptome193N
F042931Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0066368_100383692F042931AGGAGGMMNREEFYISDWDMMMKIWPNCPVDGCKNKINLNLNTGKCFPHSEGSDQWKSFKILLKNTFINRPKLLWRKMKGPIV*
Ga0066368_100383695F007138N/AMSVTVFTYPSDFKPDVLVEGIQQHFESHGFNTARMIAGSKSAYKGSKSKDLVIFNANVFMKDVGKVWYGDLNLTEDYVILKSIAESLDTTLYVLWEMDARFGKEKKPIDELIKKAAWNTDEVKPTKDWYLSVKMKEKK*
Ga0066368_100383696F027810AGGAMKNIKVGIDAFNDLAKSHDAHVKEVERLQKELDELNNLKLVDQHGELLLECKIGDKYHQLLLEAGLNTILEKFIKEENKK*
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