NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073910_1009948

Scaffold Ga0073910_1009948


Overview

Basic Information
Taxon OID3300006005 Open in IMG/M
Scaffold IDGa0073910_1009948 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_25-Nov-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)635
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005781Metagenome / Metatranscriptome390Y
F007749Metagenome / Metatranscriptome345Y

Sequences

Protein IDFamilyRBSSequence
Ga0073910_10099481F005781AGGMAYTDALNGAIDSLTTTLTAVTGLRVVNDPTKLVPNCVYIDAPSFTTVAGN
Ga0073910_10099482F007749N/AQYLYIGIDTEGDLLYDINVPIANQVLYTKVADNVERVAATGTVTYTQTCTWVTAAQLVTYLGVQITNPSDDYTLITQAVSAGNDFAYRRRQEAGYIDSLTTSPGGDATLGTLMYCAALWRSRGSLENTFASFDGMGTAPQQSLTPIVKQLLGIDRPACA*
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