Basic Information | |
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Taxon OID | 3300006013 Open in IMG/M |
Scaffold ID | Ga0066382_10008459 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3650 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Atlantic ocean | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001493 | Metagenome | 683 | Y |
F006423 | Metagenome | 373 | Y |
F006919 | Metagenome | 362 | Y |
F012510 | Metagenome | 280 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066382_100084594 | F001493 | N/A | MKSFKGYLKEAPAWTQSLSTMLFDLPRAELADVKIPLSPSIFSRVWPKPVRSKVFHLTDFDGVKKLKKMQGKKRSVSAFYNIDPYIISSGIKSEGGYVVEMDGDVLVAAPDDISSQPDKTGRRWLSWSTLIREMGGGSKIKKMEKDIENLLEDILIKNDMGPYKKKLTQNELNKGWSYLGKSVGGKEKSIIIKDYIDGMEKIMKKHSKQLRSLFTDYVDNRELTPDPDSGEFELWDEIVVNNFKIKKIHIGPEFGPDFEDEDDIDGFPFELYQDVGDMADYVTRTSQKGK* |
Ga0066382_100084595 | F006423 | AGG | MKSFKQHVDEKIEFYLDKSKDNTEKYVAHDGDYWYTGKIGMKGGEMFLKFTAISGKNSYFEKAKLKKTSPKEIEKDVGITVDSKKFYKR* |
Ga0066382_100084596 | F006919 | N/A | MKTFKGYLTEFASYSTSELVFRNAGQGTGSSGLMIPISSPMFKRIWPDTIRATVFHTTDLGGLKKLKRLEGGKKTISAFFSMMSRYMETGVATGGGIVAEMEADVIVSARDDIMSQVDNKGRRWVEMSWFEYQTRERSKFSKVERELNDLIRELVLKHLSPILGKDRARREHEFDLWADMKKHMSGDGKALSLAIKDYFDGVEKVIKKNKEVLGDIFYGYTRSKRMTDNSWDEQIVNNIDIKTVHIWPDNYKEYKEEDEDEIKKQITDIKKWPIKTWDATIDLEIYTRKVVAKEIKK* |
Ga0066382_100084597 | F012510 | AGGA | MKTFKSHINELKMEIPGSKGWVLGTKDEPKKLKDKDIIWRSKVHHWDNDVRSDNTRLIIVKNKGKFDMWAKSDKSGKIVFHFGTKPTLDAAKEFASIRKW |
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