NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066382_10091186

Scaffold Ga0066382_10091186


Overview

Basic Information
Taxon OID3300006013 Open in IMG/M
Scaffold IDGa0066382_10091186 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1069
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072431Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0066382_100911861F072431AGTAGGMNQSELHELLTSLKNNHTIREEPKKLYYLKQIIRRELGPFRSNQPSPPMNSLVPYPAIKKNIVFYSFLHNAEKPYINEHEYKRLEISWRSLRKFNKNIEVRFTLGGDMPQTSKEMWQNLCESYGIKFFPFCSSFSPDLPNAWCIHRWYNLGLWAEEDLNVLYMDADTYVNGDIELLFNIYSRDPLYGREELGFRHDPNSGISGEDPRFFLDLVDASILAQGGKVEVQKYCLGVVLLNHSVHKLFTPELLKDYTELLHGIHKFEIFYSIPNYRIMDEFAFWIILSRLGLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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