NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0073919_1002487

Scaffold Ga0073919_1002487


Overview

Basic Information
Taxon OID3300006014 Open in IMG/M
Scaffold IDGa0073919_1002487 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T3_25-Nov-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1822
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044969Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0073919_10024873F044969GGAGMSASLTVNPAKLQKALNAFVGSTKLEAAKEMRIQARMLCVSLANSTQPFGLNARAKALGEKAVTTDIDRVYKSGPTAVREIASLPLPRGKTKTQNAKQAAAALAALMLGKTFGKGKKAAQTHGKARELLGRINHKPYIYTEIGDFDRGAKHASARYGKSKRVPKNQYVRQVVTKESDLAKYFKEKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVQDRSHTKAGVFLKPYISMTNTIPWISNVINKSTVQRSIDIQVIKMIKRLSIIANYERKKAGL*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.