NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073919_1029153

Scaffold Ga0073919_1029153


Overview

Basic Information
Taxon OID3300006014 Open in IMG/M
Scaffold IDGa0073919_1029153 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T3_25-Nov-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F069849Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0073919_10291531F069849AGGAMGSSNETCTDTEFIQLWGQHESATRIAEHLGISIRATHLRRRWIEEHYKMTLPAKD
Ga0073919_10291532F000166N/ANIPTPEQSQLFAQSVRKWQQVLSLGDWRIEKGSKPAKAAMASVEFNASARLATYRLGDFGAEKITQESLDQTALHELLHVFLHDLMTVAQDPKSSQDEIEMQEHRVINLLEKLLSKDSYGKQ*

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