NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066371_10091199

Scaffold Ga0066371_10091199


Overview

Basic Information
Taxon OID3300006024 Open in IMG/M
Scaffold IDGa0066371_10091199 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Leptotrichiaceae → Streptobacillus → Streptobacillus moniliformis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105220Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0066371_100911991F105220N/AIRYIMPCSFTHNENTEQFREFARDNLNIQSIEILPQDTFEGIMIRTCIFMAINEPQVGEIELKRIWNNQTYYTSTYYNEYNEIPLFLGDISKQIYKKVMQLTHKMVAYKGWNGVDSYAKFSSSDPNKYEYQYVDGVKKEVPIIHSTKYSDKVKASVNKKRNNVGNYDRFHHKKLLINEVMFNSFEVKNHIKYFIKDELGEYGSSPKHTVIIFDDESMDSYIDTLRSPLAQFMLTIMKDYNHNDSKLFRYLPYTLLSIKLTEEEQSFINLFNETPIDKIYSLNGG*
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