Scaffold Ga0075474

Basic Information
Taxon OID	3300006025 Open in IMG/M
Scaffold ID	Ga0075474_10000141 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23857
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (21.62%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

23857

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (21.62%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F060729	Metagenome	132	Y
F061811	Metagenome	131	N
F064578	Metagenome	128	N
F076041	Metagenome	118	N
F079882	Metagenome	115	N
F090102	Metagenome	108	N
F091643	Metagenome	107	N
F101256	Metagenome / Metatranscriptome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_1000014111	F064578	N/A	MTRAKTEAFIQGITDGTFQGDAATIYNLIRDKHVMTLPEISVILDKSLNQFSGRISELLDAGLIKEMKGEKYSLFRITQSDQERYECAKIRHDEKIEKLRKKADELGYFLVKKMW*
Ga0075474_1000014112	F091643	N/A	MEAGSKVKVYLGNVAACYGIATGRAKEMNGVTIYELKECEPFQIEEADHFRDANQVSFDIKFAKEIKTYNDMERFYVNISTLNYFKLKKECFKFEQQTLF*
Ga0075474_1000014117	F079882	GAG	MATIKQISLIEPQMAIFVIKKLLHQVNDEAISQAISKLKDEDFEELVNILMWLGYEEKTINQILK*
Ga0075474_100001412	F060729	N/A	VKLHELKEKLSQLNLKDYDGMHLGSGTILDAKRFVENHISFLESNPNNSTFLLYYNRLFEFYNKTQNNEM*
Ga0075474_1000014120	F061811	N/A	MDIQKLTDSELSTLIKECRLELEQRKQSLEDVLLEDDFQKYKSKYARLTLFYDFCRGVYSVTESELKEKNQSKKKRNIRNAVINYLLSEGFSHQDIVDEFDLARTSLSSPISYHEKYYKLDKNYTDIFEDVKQFFED*
Ga0075474_1000014128	F090102	GGA	MNEYRITANGKEKKIVKLPTGRHEVTLEQWNNAYKYVELAVEANRLFEEGKLEKSQAKVIESMCGTIAALGEGITYEELLNVEFNKINNLFLIQFGWLSEEKPKRNFKIKGKKFSVPKFEQGTCGDFMDVMSLLAMHEEYNDAEKGLLIAAVYMRNGEYYQDLEEINQRIEFLKKYGRMDLFYSAAFFLLSSLRSYKIDTQRHSAVVREMEKLTSTLVSWATILFSQVSQRLESFRTT*
Ga0075474_1000014131	F101256	AGGA	MSQLGDFLKKAIEEEMEFNKRLASGESVATLREEIKDEHLLIYGVDYWDEINNGVPSGTLVDIEDLRSWVNAKSQRYGGTFPPITAIQRRIYAKGSSTPKEKLDIIPKVIKKNQAEITRQAENYVTNFLKLR*
Ga0075474_1000014133	F076041	AGCAG	MAIALTTQPTTDGLYSAYLPVKFVATETTNDPAYLEFELKTQAGASIPNVPKYRALNVNNTFTFDASNYLKSILNVFTTQGYSTTAIEHLDDLYGKYEVEVTDPINSLTALTSNEFYAFANIDGLRYSNDQTANDGINRKGMLYGSELFNGSFAPKYQGAYDRCVVFAQSPEISIVTYDADKPNQYTTPKQFAEIDISSWTNRLISVPLNRTFLATNALVPPSSTPLSKYAGFKASHASLGDMYYYVEDRCKVNEFMFINRYGVKENIKFETYDYESVKTSSESYLVGGYTHTGNTNFFNTSANNVKVNQSIVEDYEVRGNFFTSRHKGELQDFVSSPLQWVVDNGELRPINVLDGSFKLVEKSRGIDFNFKYRYAQTKPSFK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075474_10000141

Overview

Ecosystem & Geography

Associated Families

Sequences