NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075474_10002523

Scaffold Ga0075474_10002523


Overview

Basic Information
Taxon OID3300006025 Open in IMG/M
Scaffold IDGa0075474_10002523 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7703
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017135Metagenome242N
F020172Metagenome / Metatranscriptome225N
F058153Metagenome135N
F064230Metagenome129Y
F072361Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0075474_100025231F058153GGAGMARFDFYEILINHPSWEENYHDITDPEIRRELMCDVEEISSEIAPTAMQQTGSEIEWVDLIFNDEVDPAVVVQKTRELLWNYSESMIVDLIESEAAKHAEAYDD*
Ga0075474_1000252312F017135GAGGMIPIISCPLPGGGQALIKTQDIGGATTGKNPKHCDVYVLGWAANGITVDLSLDDFAEIWVSALFDEGSNDIEIVFTPDDLH*
Ga0075474_1000252313F064230GAGGMTLKSYLPQMTCTECHKIMVPQFKKEYPHKLDGWSCDCGNCEKAILRERQYTRADDGSQARAV*
Ga0075474_1000252318F020172N/AMCTTVKRAMFCTRNGYKHIENLDKVCVLIGRLKGLTESEYLDLCAINKLENARALEMAKHYPSH*
Ga0075474_100025232F072361GGAGGMIDLSRSDEDFLTERYKDWLQVASREFRKGFMDGMACNCQKYPATDMYLSGYADGYALTQMRDASQHAGETL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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