NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075478_10034375

Scaffold Ga0075478_10034375


Overview

Basic Information
Taxon OID3300006026 Open in IMG/M
Scaffold IDGa0075478_10034375 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1685
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006492Metagenome / Metatranscriptome372Y
F007652Metagenome / Metatranscriptome347Y
F066601Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0075478_100343751F066601N/AMVTFLLGVLVAWKGCGTGSKVITETIEIEKPIYRTEYVDRWKTDTVRFVERVTVTDTITNTIIQEREVLKVDTVQIIEAWLTEVNKYDTTIILADGSLQATWFNYQNITEEAAFTYTSNVQKAPMYGVGIHASIEAQTDFIEKVKPLFGVGIHGDILKLYI
Ga0075478_100343753F006492AGGMDAILEALASYGIAGIFLAVLVYYLNKLTDIHREERKDWQDANDKHVEKFADVISENTKALVEMRGELKENKCKM*
Ga0075478_100343754F007652AGCAGMNEIRFPEVRTYYICFDNERTEVKSYGWVEPSQVFETIWIFDEFTDEEQWIAELLVWGIVPDIDEQGNLVF*
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