Scaffold Ga0075462_10030334

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075462_10030334

Scaffold Ga0075462_10030334

Overview

Basic Information
Taxon OID	3300006027 Open in IMG/M
Scaffold ID	Ga0075462_10030334 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1741
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040933	Metagenome	161	N
F059470	Metagenome	134	N
F088806	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075462_100303341	F040933	GAGG	MKDILNAHLAELVNNVENGDTSPLEAWFEIKQIMDKAKWAMGLVEDAAINEREFIGADEYKVEGFRIEVVQGRKIYSYKHIGRWKELQVQMKQVEQAAKTAADTGHLVVDHYGQEIEPAEMSFGKSYLKASVIR*
Ga0075462_100303343	F088806	GAGG	MAMEWKDYSQTKPHKPDWYLVWVSDTRYQAGYADIDYWDGTKWEVNRTSINWWFEIKPPPSNNKQVEQ*
Ga0075462_100303344	F059470	N/A	MIVLRVHLWANSPVDGQDMIKLEAYGGNDNPDRGDAYKGAMTDALTKIGSFLGIGADVWKDKGPKSSQNRPQRARASKPVQPQGQAPSSDSEPTSWLNLSDKDGFVNERGQQILEGVRLGEYTIDMIKSKYKINKRDFELLQEAAKR*

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