NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075466_1002338

Scaffold Ga0075466_1002338


Overview

Basic Information
Taxon OID3300006029 Open in IMG/M
Scaffold IDGa0075466_1002338 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7023
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045376Metagenome / Metatranscriptome153N
F084731Metagenome112Y
F103897Metagenome101N
F105933Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0075466_100233811F045376N/AMNYTNTQIESMYLDWFNNFLSCDAWRQHYDLGMAEGENILDIGRQLNEIRKHD*
Ga0075466_10023382F105933N/AMENINTSALAHDLRIQAAKQLFDGLTFSQATTTSEWDALTCDEQMTIEDLIG*
Ga0075466_10023384F084731N/AMNKHELTRLAYGTTLMDGGYTLWKDEKTRLKGYVVGGVCTEADCLAEASTRFAELFDIYLNKLDIIVIKAHDIYLDNLDAHTSYRTLGIGTWVDEGRVYFDIVEYVENEQDAVDMCVERGEKAYFDILAQKNIYIKDEK*
Ga0075466_10023389F103897N/AMNQETLEGIPNTDVTTQAISVVRENLPEWFRENLWLVIQTCIDHEDWSERLIEVERTNLLFTNDIVHDIRGLLNKDEHFLPRI*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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