NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075470_10000002

Scaffold Ga0075470_10000002


Overview

Basic Information
Taxon OID3300006030 Open in IMG/M
Scaffold IDGa0075470_10000002 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119810
Total Scaffold Genes196 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)139 (70.92%)
Novel Protein Genes23 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Associated Families23

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000450Metagenome / Metatranscriptome1126Y
F000473Metagenome / Metatranscriptome1097Y
F002060Metagenome / Metatranscriptome597Y
F002501Metagenome / Metatranscriptome553Y
F013526Metagenome / Metatranscriptome270Y
F015988Metagenome / Metatranscriptome250Y
F018349Metagenome / Metatranscriptome235Y
F023344Metagenome / Metatranscriptome210Y
F030095Metagenome / Metatranscriptome186N
F037190Metagenome / Metatranscriptome168Y
F038643Metagenome / Metatranscriptome165Y
F040629Metagenome / Metatranscriptome161Y
F043932Metagenome / Metatranscriptome155Y
F047643Metagenome / Metatranscriptome149Y
F050377Metagenome / Metatranscriptome145Y
F068492Metagenome / Metatranscriptome124Y
F073599Metagenome / Metatranscriptome120Y
F076926Metagenome / Metatranscriptome117Y
F091920Metagenome / Metatranscriptome107N
F099174Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0075470_10000002129F050377AGGAMTTPTTTREYLKAQGITVGKRGRFSAAAKNAISEASKKGVVFSDKKNVK*
Ga0075470_1000000213F000258GGGGGMPNYKLDAMFELRKYLWNKLKAANIFDANDYYSDNIKETMIPLIPIQQAPEMNQFLSGKKHIVYDKIGISYENNWLICCEQILFTIYATDLADVVEIRNFMMDEFRRMDDSAEDINYWSGLSDRFKFHSIFIADISPIKPSEEIQGFLETDVILEVKYSRITDNNGRFA*
Ga0075470_10000002132F068492GGAGGMMYSMELEPRLQKQVDMNISGTDILHGELKNLIYEAEAELARAQEIEEENDYGDAMESMERKYWEGQVDGLSHVYALTYQLAFAINERTKARG*
Ga0075470_10000002133F015988AGGAVNQLIEYIKLHVISLEQDQEDVSNEMEKLDMNSKDYIELDFEYNHLGGQILSARHILSVAEDILG*
Ga0075470_10000002135F023344GGAGVEAFTDTLGEHILGAIQVDIEEHLFEQWNQSNLDEGTEYAEFRFIQFAPDSVKQSYNEFYGYKEGDEYYVGI*
Ga0075470_10000002137F000450AGGCGGMGDRANFVFVQPSGETIVLYGHWAGHNMLEHLGEAVAKAQSRWSDPSYATRIAISQMIGDGWGMETGWGLQVNEISDNEHKIPVINWLEQTMSLHEEDSHFNESNKVRGMKNEAIFTIDLRTFVEKYTDAKLLV*
Ga0075470_10000002139F018349AGGAGGMDYKDGFEDGVKFTREVIIANIRKWAEDSILGEEGAIMDSVADKIEFGTLDNDL*
Ga0075470_10000002140F047643N/AMYYQLQAPTSAACKAAYWEAEFSGLDPYWLESNVFELGTGSIEKVSALISKYNLDILVESDYQPTGYTRR*
Ga0075470_10000002143F091920AGAAGGMRNRFRIEIYDENKLNDLTLYSEQGVDKEYLTELVFSNLSQFSGRVKAYVYDELKKKKTVALLIPEETVINLKPKQLTRIELGLI*
Ga0075470_10000002149F038643AGGMKDMTRWALFPFTVDGVEFVSKLDIEGSMYNQVKNLPAGLFTAMNEGAIREIIGSVSTMSKSEIQAELDRVNEGYSQAYLALA*
Ga0075470_10000002152F013526AGGAMKKNVLISFVTEADTDLEAVFDLNKIFLALPESELKKFDVFDVLEVVE*
Ga0075470_10000002160F037190AGGAMDRYLLIELGSDGIAFETAQFDFYASWLGIGIAIVSVVAYKIYKNRK*
Ga0075470_10000002161F073599N/AMKEGSKMSANLYNIESLLIGKPYRSRSVEGEIVEAEKHPKCVYYADAEAYLVRIRKSMGGYTYRTVAVSVA*
Ga0075470_10000002174F076926AGGAGLKIQVVSKYLSLAEEGLVQKMECPLDQGLLMPNQDNDDKIFLYCLSCEYKKIIGLEMYNKMKRAMDAKS*
Ga0075470_10000002178F030095AGGMAAQKNFEVDQNSTFTFEVQYLDEDESPIQLHFHTAKMQVRDTQGGKKIAFTLTEEDGITISPTEGKLSISIAADRTNKMFYPKSAYDLVLIDPSVNKTRLLEGYMTLNRAVTI*
Ga0075470_10000002181F043932AGGAGMPKLKSLLNLVTLEEDPAAGSTGDVYFNTVSKNIKIYNGAIWVDLTPGSTDPAPFYMHTHSYDGDVHTIDIQETINFNTDINNESNVEEEIPVIIGLDGGAPESTYNNASYTQLTLLDGGEIGN*
Ga0075470_1000000227F002501AGGMMKCGRCNGRVFVDRVFSQKLHVELFCILCGKRWMINKDTSALGRWLEQVEKNKLKDLSISS*
Ga0075470_1000000254F000369N/AMEIELADHFDRMNRVVEELLKGNNPTQIATLTGFKRSEVIGYIDEWKEVVRSDSGARERAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKATSLKLIADIEGKRIGMLQEVGLLDNAELATQIADTERKQDILVKILKEVTATCPKCKLEVAKRLSQITGIIEPINIEDNEVITNVQ*
Ga0075470_1000000257F000376GGAMSIYQDKAKECKCCGKHVPLPVRLKEFNGIKVCPTTFDNIFEYKRIWNETGKRPPGNIRKHFSEYVQQIVEQSIDKKELENI*
Ga0075470_1000000277F099174N/AMKKIAASLVSTMLAITLTSCNYDGRYRYECQDSANWENPECNPPICETSGTCSRDLVGKTVWDEYQKSKVKNG*
Ga0075470_1000000281F040629N/AMNKYSIKIEINAEVEAFSEDDAKEYVSDIFGIDDEIKSVKIVKIKEK*
Ga0075470_1000000284F000473N/AMVFNNDKHHFKHGINLWTGEPNKPVFYNEEMRKRLREMNKPLLLEMDVVKYPEFLALRLYEDNFIQFTGSKKEQVIDYVMRVKKMIESYGVRCELEGVPSAKGIG*
Ga0075470_1000000287F002060N/AMDINYVTVVLSLLAAILSGMGTAIIAGIRDSKKEKVRREEREKDHLKLEIKDLKIDLYKLEKELTEWKDKYYNAIQELIGLKAELENALTQLSHIEMHEDIDSEFYK*
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Biomedical Sciences Research Center "Alexander Fleming"
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