Scaffold Ga0075470

Basic Information
Taxon OID	3300006030 Open in IMG/M
Scaffold ID	Ga0075470_10000141 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25279
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (45.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

25279

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (45.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F024095	Metagenome / Metatranscriptome	207	Y
F030057	Metagenome / Metatranscriptome	186	Y
F043831	Metagenome / Metatranscriptome	155	Y
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000014118	F063343	N/A	MNYLILLGILGLFAIGSKSSVGWVQSIKETLLKIMVPGADRRLFSGFTQATFSWIRNPASWVRVFNWTGYAAGINGLGGVGGGTLITRRHVLFANHVPYPARPFDIFFVNADSRTFTYKVVNVQQVGDTDIAIGTLDRDADATLTVYKVLPDNWTQYAKAKTESFSAMGVTGTATSVSLPVLYSNQDRKVSTADLINVRAGVADLGIPAFEVARSFGDPIRGGDSGNPIFVPVGNELVLLGGFKQLGTGGVIASFPWLIDYRGAIENIIGQKLQVVDLGRYA*
Ga0075470_1000014124	F014837	N/A	MIQRNINPKPRFVTLTSGPSTGALVGVPLATLYRAAFFRFPQDSIVHYVMVNSTLTANGALSQGIGSIAYGQGDQAIGDSLNPGADNFTDNVIWRDELLNPIAGVISEGKSTQIIMNEFFVHTGTGFGIYVNGTNASVNINATIAFNPIAEWVNFREPTVGVRI*
Ga0075470_1000014125	F024095	GGCGG	MDNTNSLPFVYVVTASLGAAVGATVSTTLIMQADSRFELMGIMGTGGTAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAATNSITLALHGYKIII*
Ga0075470_1000014126	F016141	AGGA	MTPEIIDSLQKRFGSSDFSRYQVVRGQKYDFVRLQAAGTSSVSFFSNPIGAVDPGSGAAGIFKTLEQTNLVKNASFGQEYFALTQIRCYANFVPQARQGFTPGSNFAFRGYTALADSAMENLQSVLNTGVLEIKFAQKLYYQIARPFVQCPPGFGIDVQSLGSSRTGNAAETQVSDTNWLVRPDYRGSSVYNIDPIQIIEPEIQIQAAINFPTGNTPSFTGVTLTTANDAAGLSTGVELGLIFDGYVIRPSQ*
Ga0075470_1000014127	F014726	N/A	MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPTAGASELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLANNNLDGFTLANGVANTIDTFALASDFLNGFVQAGVLEFSVGARPFATIPKPFMYAPPPGNPVDYDNSYANQIGAVPTAGNPQVVGLPWVTQTKRRDNVYFVDPNILIEAEQQFAVKLSFPSGAVPVIANALVNNTTNPLKVGVVFDGLLLRPVQ*
Ga0075470_1000014139	F030057	N/A	MAVAYNLKKTLGGSLWKWQDDVEKVFTIISPIRAGKAVSNPRSGIAKAPDVMTVRDAEDGNEKDILVGAVLRSSLTESYPDDTYVGLTFACTQGAVKTGTRYKTMTVAEVEIEEHAPKKAKK*
Ga0075470_100001416	F043831	GAG	MTSSQLASIAYTLGVINIARSQLYQLASDLNDINEGPLSVKLELAVRAFEERAEEHRKILNEYANETLISPTQNLQP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075470_10000141

Overview

Ecosystem & Geography

Associated Families

Sequences