NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075470_10003850

Scaffold Ga0075470_10003850


Overview

Basic Information
Taxon OID3300006030 Open in IMG/M
Scaffold IDGa0075470_10003850 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4648
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021298Metagenome / Metatranscriptome219Y
F031856Metagenome / Metatranscriptome181Y
F058109Metagenome135Y
F087139Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0075470_1000385011F058109AGCAGMIETDYYILNQEQFNQYNTEAQEVGVSLDYYLDEFCDVIGPYITSN*
Ga0075470_100038502F031856N/AMNYNVLYKGRKIYMDLTPEECSEVLQDLSEKFFSGDDIDPNFIELEEIVNG*
Ga0075470_100038505F021298N/AMSKSVMLSLLAQGNTGSEILSILDTLTEDNQQAVAYAEPTADSIEF*
Ga0075470_100038508F087139N/AMLLSKASFTDQQLPPFIVKKEDEYTEEGNYSLHLFSRTVITTEGRKYRYLPLKFEGELARFKKRKEAEEYARYRLALD*
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