NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075470_10040023

Scaffold Ga0075470_10040023


Overview

Basic Information
Taxon OID3300006030 Open in IMG/M
Scaffold IDGa0075470_10040023 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1445
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028486Metagenome191Y
F101026Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0075470_100400231F101026AGGAGMAYVCRNYDEALGTFALRGPVRSSKWQPNERPLDPKPVSHHRLIEGVNDYGKYFDVKLYQTIMARFYEPKVEDGKRVERRLYMGHGSQTSRQFMSHTLRVECGANTLWSDGVHADERTIMPIYTTGFMRDDGVMFSLNSYWVDGNLDTTRSQHTPHYRLVADNDVRKHKQRVAAHFEPYIMLAQMRMPEFKAECKIDRRF
Ga0075470_100400232F028486AGGAGMGYRSDVAYVIKFDDIETRDNFVTLMLAKNDKWITQALDECEYGYDEDPIITFETQSVKWYDSFDDVKAHHQLMRDAVAIYKEKGGRYRFISVGEDGEESCDENDSEGDLYEYITTVHEVRTDFPLIKVSTTQE*
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