NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066651_10207251

Scaffold Ga0066651_10207251


Overview

Basic Information
Taxon OID3300006031 Open in IMG/M
Scaffold IDGa0066651_10207251 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1038
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036182Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0066651_102072511F036182GAGMKLGRVYWVILLAEIAACSGKAALRYRPRRDAVHHYVVTMRYGREDAPIVAAVARTGQVWTIYYTEFGRFTDPRGAGSEVSLQIDSAQLQPSGADPDLSAMNGATILAFLDGSGQLQRTEPDTFPGLTPNMVLRLRALAAAVAPWFSQDPVEPGDGWTVTTPAPVEVLEMSGQDSSTLQLHATLNALQKSVNDRIADVGIDAQLPAVETRVTTSLGTLAARSSGTMSGRYRFSLPRGVMISEELSVRLSLVTTHPMVGRDTLLS
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Institute for Fundamental Biomedical Research
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